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CytoTree

A trajectory inference toolkit for flow and mass cytometry data. CytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and dimensionality reduction to trajectory reconstruction and pseudotime estimation. It offers complete analyzing workflow for flow and mass cytometry data.

See the tutorial of CytoTree, please visit Tutorial of CytoTree.

The previous version of CytoTree is flowSpy link to GitHub and link to Bioconductor. To improve the identification and avoid awkward duplication of names in some situations, we changed the name of flowSpy to CytoTree. CytoTree more fits the functional orientation of this software.

We apologized for the inconvenience.